Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6716290 chr2:242515096 A/C 3.82E-5 178 25.92 25.6 20.28 KM Plot
PCPG rs6717283 chr2:242516105 A/G 4.19E-11 178 25.87 24.85 10.3 KM Plot
PCPG rs6717829 chr2:242583729 G/C 9.01E-11 173 25.67 25 10.3 KM Plot
PCPG rs67182390 chr2:24284749 G/GT 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs67211173 chr2:241538924 C/G 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs6721278 chr2:24359722 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs6723592 chr2:24356526 A/G 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs67248199 chr1:54382851 CAAA/CA 0.000224 174 25 26.97 18.7 KM Plot
PCPG rs67260198 chr14:74299832 A/G 5.08E-6 173 25.47 27.2 10.43 KM Plot
PCPG rs672696 chr1:201679080 C/G 1.18E-6 178 27.2 18.75 10.3 KM Plot
PCPG rs6729394 chr2:118551071 G/A 1.95E-5 176 25.17 25.53 11.65 KM Plot
PCPG rs67324999 chr3:80548323 CAGA/C 6.66E-5 176 19.87 24.03 27.2 KM Plot
PCPG rs6733427 chr2:242587251 G/A 7.57E-11 175 25.67 24.7 10.3 KM Plot
PCPG rs6736612 chr2:61536657 C/A 6.33E-5 178 23.77 30.33 10.3 KM Plot
PCPG rs6736948 chr2:61536929 C/T 6.33E-5 178 23.77 30.33 10.3 KM Plot